I don't have a kegmenter (yet), so am far from an expert on this matter, but...
Isn't that kind of defeating some of the benefits of brewing in a kegmenter? I thought the idea was that the increased pressure will suppress some ester formation that happens fairly early in the fermentation process. Thus, if you perform most of your fermentation at ambient pressure and only capture the CO2 at the end, you are effectively only using the kegmenter to carbonate the beer. Thus you are missing out on some of the benefits - higher temps, faster brews, less off flavours.
Or have I got it completely wrong?