Screwy,
I have mine set-up just like cliffo (without the stem elbow) works a treat. Its just like a normal fermentor with a tap, but my tap can have 8mm OD line connected straight into it. It sticks out just a few mm more than a standard fermentor tap would.
Ross,
You're of course right about the lack of vacuum in a syphon system, except where the inflow of air into the fermentor might be restricted. Remember I was originally talking about a situation where a sterile filter might be being used on the air inlet to guard against infection... if the restriction through the filter were too high, as the head pressure of the liquid lowered, then the lower pressure inside the fermentor could well get close to balancing out the head pressure. That would leave a situation where a leaky connection could allow air bubbles to be pulled in by the syphon action.
It is however far more likely that your scenario is the one thats happening and its just a build up of C02 coming out of solution. I like your remedy too. Turn the housing upside down to keep the gas away from the line. With the clear housing, you can even see if the gas builds up too much, turn it over again and purge it. Nice.
Still... wouldn't hurt to make sure the ends of your line are nice and square and that the JG fittings are in good nick. I have broken one or two of the fittings "teeth" in the past and then they still mostly seal, but if you pull the line at certain angles... leaky leak. Its worth a look down the business end of the fitting just to make sure that there are still the full complement of 5 little grey plastic leaves with the little metal blades.
Thirsty