I commonly get the same difference you're experiencing. Like the boys have said, the alcohol content begins to have an effect on your Refractometer reading, particularly at the end of fermentation. The first time I used my refract, I couldn't figure out why my wheat beer wouldn't finish out to 1012. Guess what - it had!
I haven't done the experiments yet, but you should be able to compensate based on the alcohol content - the biggest challenge is that this is not constant over the fermentation cycle. I rather suspect that the end result will be that it takes twice as long to use the refract for this than the Hydro, and at least with the Hydro you get the sample at the end.
If I can't figure out the compensation, My R may well become another one of those bits of brew kit that gets relegated to the Shrine of Bunnings (you know - that corner of your garage filled with all the bits you saw at Bunnings on your numerous trips and thought "S**T ! That would be useful - better get me one of them!")
Andy