There are quite a few different forumlas to calculate IBU's.
Rager, Tinseth, Garetz and generic are the options you can select under Promashs System settings. They are all different and I don't think anyone has come up with a standard. The trick is to pick one and then stick with it, experience from brewing a particular recipe will let you decide if that recipe comes out a bit too bitter or not enough, so next time you might add or subtract a few IBUs, but for most recipes picked up off the net the method of calculating the bitterness is rarely stated. I think for the most part it is close enough though which ever one you use.
I use Rager, but have no real reason as to why.
Cheers.