Not an original idea, goes back to Graham Wheelers first book (so early 80's) glue a sheet of graph paper onto the surface you are drilling.
If you texter out the zones you want to perforate with a good black texter and glue the sheet down with something like Aquadhear or some other PVA or water soluble gum, then it just becomes a case of drilling every third box or so. Helps help to keep it all neat and lined up and you should be able to see where you have marked out through the paper
On the drills, if you ask for Jobber Drills, they have a point on both ends, mainly made for pop riveting, they are pretty cheap and come in packets of 10-12, don't be afraid to throw them away SS kills drills - a small pot of a drilling lubricant is also a good investment.
Mark